I don't think anyone has ever scientifically analysed every single shade and tone of every single of the thousands of the works of artists who have existed since before the ready-mixed tube paint was developed. There is, however, plenty of analysis of the different pigments. The National Gallery in London certainly has made a number of publications and papers in magazines in the past on this very subject (the Scientific Department) as study helps the conservation of old works.
All artists would have made, or had their apprentice make, their paints from the basic earth and mineral and plant pigments, and then mixed according to their own palette preferences.
So yes - standard colours (basic ground-down pigments) and then mixed. And no, I don't think any 'unique' pigments, although you may find some differences in, say, Asian and Western and Australasian art, where the import or export of materials was not possible in previous eras.